SNP Profiles of PLAYA ALTA 2 [VEN]   View Data

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 Key

 1234567891011121314
_Input profile
AAAAAAAAAAAGAACCAAGGAGAAAACC
1._MITC-000367
AAAAAAAAAAAGAACCAAGGAGAAAACC
2._RUQ_232
______AA_______
3._PLAYA_ALTA_2_[VEN]
_____CTAA_______
4._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
5._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
6._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
7._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
8._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
9._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
10._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
11._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
12._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
13._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
14._PLAYA_ALTA_2_[VEN]
_____CTAA_AA_____
15._GC-08-173-4-16
AAAAAAAATTCTAAGGAACCAGTTTTGG
16._GC-04-017-1-17
AAAAAAAATTCTAAGGAACCAGTTTTGG
17._GC-04-017-1-17
AAAAAAAATTCTAAGGAACCAGTTTTGG
18._GC-04-017-1-17
AAAAAAAATTCTAAGGAACCAGTTTTGG
19._GC-04-017-1-17
AAAAAAAATTCTAAGGAACCAGTTTTGG
20._GC-08-173-4-16
AAAAAAAATTCTAAGGAACCAGTTTTGG
21._GC-08-173-4-16
AAAAAAAATTCTAAGGAACCAGTTTTGG
22._GC-08-173-4-16
AAAAAAAATTCTAAGGAACCAGTTTTGG
23._GC-08-173-4-16
AAAAAAAATTCTAAGGAACCAGTTTTGG
24._GC-04-017-1-17
AA_AAAATTCTAAGGAACCAGTTTTGG
25._RUQ_232
_____CT_GG__AG___
 1516171819202122232425262728
_Input profile
GGAAAGAGAAGGAAGGCCGGCCAGCCAG
1._MITC-000367
GGAAAGAGAAGGAAGGCCGGCCAGCCAG
2._RUQ_232
_TT______CC_GG___
3._PLAYA_ALTA_2_[VEN]
_TTCT_AA___CCCCGGAGGGCT
4._PLAYA_ALTA_2_[VEN]
__CT_AA_TT_CCCCGGAGGGCT
5._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
6._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
7._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
8._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
9._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
10._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
11._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
12._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
13._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
14._PLAYA_ALTA_2_[VEN]
_TTCT_AA_TT_CCCCGGAGGGCT
15._GC-08-173-4-16
CC_CTTTAAGGTTCCCCCCGGAGGGCT
16._GC-04-017-1-17
CCTTCTTTAAGGTTCCCCCCGGAGGGCT
17._GC-04-017-1-17
CCTTCTTTAAGGTTCCCCCCGGAGGGCT
18._GC-04-017-1-17
CCTTCTTTAAGGTTCCCCCCGGAGGGCT
19._GC-04-017-1-17
CCTTCTTTAAGGTTCCCCCCGGAGGGCT
20._GC-08-173-4-16
CCTTCTTTAAGGTTCCCCCCGGAGGGCT
21._GC-08-173-4-16
CCTTCTTTAAGGTTCCCCCCGGAGGGCT
22._GC-08-173-4-16
CCTTCTTTAAGGTTCCCCCCGGAGGGCT
23._GC-08-173-4-16
CCTTCTTTAAGGTTCCCCCCGGAGGGCT
24._GC-04-017-1-17
CCTTCTTTAAGGTTCCCCCCGGAGGGCT
25._RUQ_232
_TT_CT___CCCCCCGGAGGGCT
 2930313233343536373839404142
_Input profile
AGATAGAAGGAGGGGGGGCCATTTAAGG
1._MITC-000367
AGATAGAAGGAGGGGGGGCCATTTAAGG
2._RUQ_232
_____AG______AA_
3._PLAYA_ALTA_2_[VEN]
___AA_AG_CCGG__TT__
4._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
5._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
6._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
7._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
8._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
9._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
10._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
11._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
12._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
13._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
14._PLAYA_ALTA_2_[VEN]
CT__AACCAG_CCGG__TT__
15._GC-08-173-4-16
CTATAGAACCAGGGCCGGGGATTTAAGG
16._GC-04-017-1-17
CTATAGAACCAGGGCCGGGGATTTAAGG
17._GC-04-017-1-17
CTATAGAACCAGGGCCGGGGATTTAAGG
18._GC-04-017-1-17
CTATAGAACCAGGGCCGGGGATTTAAGG
19._GC-04-017-1-17
CTATAGAACCAGGGCCGGGGATTTAAGG
20._GC-08-173-4-16
CTATAGAACCAGGGCCGGGGATTTAAGG
21._GC-08-173-4-16
CTATAGAACCAG_CCGGGGATTTAAGG
22._GC-08-173-4-16
CTATAGAACCAGGGCCGGGGATTTAAGG
23._GC-08-173-4-16
CTATAGAACCAGGGCCGGGGATTTAAGG
24._GC-04-017-1-17
CTATAGAACCAGGGCCGGGGATTTAAGG
25._RUQ_232
__AAAACCAG_CC____AAGG
 4344454647484950515253545556
_Input profile
ATAGGGGGGGATGGAGCCCCAGAAAGCC
1._MITC-000367
ATAGGGGGGGATGGAGCCCCAGAAAGCC
2._RUQ_232
_________CC___CC
3._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
4._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
5._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
6._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
7._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
8._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
9._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
10._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
11._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
12._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
13._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
14._PLAYA_ALTA_2_[VEN]
AT___GG____CC_TT_CC
15._GC-08-173-4-16
ATCTGGGGGGATCC_CCCCAGTTAGCC
16._GC-04-017-1-17
ATCTGGGGGGATCC_CCCCAGTTAGCC
17._GC-04-017-1-17
ATCTGGGGGGATCC_CCCCAGTTAGCC
18._GC-04-017-1-17
ATCTGGGGGGATCC_CCCCAGTTAGCC
19._GC-04-017-1-17
ATCTGGGGGGATCC_CCCCAGTTAGCC
20._GC-08-173-4-16
ATCTGGGGGGATCC_CCCCAGTTAGCC
21._GC-08-173-4-16
ATCTGGGGGGATCC_CCCCAGTTAGCC
22._GC-08-173-4-16
ATCTGGGGGGATCC_CCCCAGTTAGCC
23._GC-08-173-4-16
ATCTGGGGGGATCC_CCCCAGTTAGCC
24._GC-04-017-1-17
ATCTGGGGGGATCC_CCCCAGTTAGCC
25._RUQ_232
AT_____CC__CC_TT_CC
 5758596061626364656667686970
_Input profile
ACAGAAAAGGAACCGGAGAACCACAACC
1._MITC-000367
ACAGAAAAGGAACCGGAGAACCACAACC
2._RUQ_232
AC_TT___GGGG____AATT
3._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
4._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
5._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
6._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
7._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
8._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
9._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
10._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
11._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
12._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
13._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
14._PLAYA_ALTA_2_[VEN]
AC__TT__GG_______
15._GC-08-173-4-16
ACCTTTTTAAAGGGGGCTTTGGGTAAGG
16._GC-04-017-1-17
ACCTTTTTAAAGGGGGCTTTGGGTAAGG
17._GC-04-017-1-17
ACCTTTTTAAAGGGGGCTTTGGGTAAGG
18._GC-04-017-1-17
ACCTTTTTAAAGGGGGCTTTGGGTAAGG
19._GC-04-017-1-17
ACCTTTTTAAAGGGGGCTTTGGGTAAGG
20._GC-08-173-4-16
ACCTTTTTAAAGGGGGCTTTGGGTAAGG
21._GC-08-173-4-16
ACCTTTTTAAAGGGGGCTTTGGGTAAGG
22._GC-08-173-4-16
ACCTTTTTAAAGGGGGCTTTGGGT_GG
23._GC-08-173-4-16
ACCTTTTTAAAGGGGGCTTTGGGTAAGG
24._GC-04-017-1-17
ACCTTTTTAAAGGGGGCTTTGGGTAAGG
25._RUQ_232
AA_TTTT__GGGGCT__GTAA_
 717273747576777879808182  
_Input profile
GGCGGGGGAGCCAAGGAGAAGGAAX_XX_X
1._MITC-000367
GGCGGGGGAGCCAAGGAGAAGGAAX_XX_X
2._RUQ_232
_CG__AG______AAX_XX_X
3._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
4._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
5._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
6._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
7._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
8._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
9._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
10._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
11._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
12._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
13._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
14._PLAYA_ALTA_2_[VEN]
_CGCC___TTGG_AACCAAX_XX_X
15._GC-08-173-4-16
_CGCCCCAGCCTTGGCTAACCAAX_XX_X
16._GC-04-017-1-17
_CGCCCCAGCCTTGGCTAACCAAX_XX_X
17._GC-04-017-1-17
_CGCCCCAGCCTTGGCTAACCAAX_XX_X
18._GC-04-017-1-17
_CGCCCCAGCCTTGGCTAACCAAX_XX_X
19._GC-04-017-1-17
_CGCCCCAGCCTTGGCTAACCAAX_XX_X
20._GC-08-173-4-16
_CGCCCCAGCCTTGGCTAACCAAX_XX_X
21._GC-08-173-4-16
_CGCCCCAGCCTTGGCTAACCAAX_XX_X
22._GC-08-173-4-16
_CGCCCCAGCCTTGGCTAACCAAX_XX_X
23._GC-08-173-4-16
_CGCCCC_CCTTGGCTAACCAAX_XX_X
24._GC-04-017-1-17
_CGCCCCAGCCTTGGCTAACCAAX_XX_X
25._RUQ_232
_CGCC_GGCC_____AAX_XX_X

Input profile: PLAYA_ALTA_2_[VEN] RUQ_232

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._PLAYA_ALTA_2_[VEN] MITC-000367

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

2._PLAYA_ALTA_2_[VEN] RUQ_232

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

3._PLAYA_ALTA_2_[VEN]

54.8 %
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

4._PLAYA_ALTA_2_[VEN]

52.9 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 10
 Dapeng Zhang, 2016

5._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 9
 Dapeng Zhang, 2016

6._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 11
 Dapeng Zhang, 2016

7._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 8
 Dapeng Zhang, 2016

8._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8416 7
 Dapeng Zhang, 2016

9._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 8 > FP
 Dapeng Zhang, 2016

10._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 7
 Dapeng Zhang, 2016

11._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 6
 Dapeng Zhang, 2016

12._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 5
 Dapeng Zhang, 2016

13._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4117 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

14._PLAYA_ALTA_2_[VEN]

51.4 %
35 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0303
 Dapeng Zhang, 2016

15._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

51.3 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

50.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

50 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

50 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

50 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

24._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

50 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

25._PLAYA_ALTA_2_[VEN] RUQ_232

44.6 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998